HEC-HMS
The US Army Corps standard for rainfall-runoff modelling — event and continuous simulation, free to use.
USGS's merged surface-water and groundwater statistics program — baseflow separation, flow duration, low flows.
by US Geological Survey
The Hydrologic Toolbox consolidates two long-serving USGS programs — the Surface-Water Toolbox and Groundwater Toolbox — into one Windows application for streamflow-record analysis: baseflow separation by the standard methods (BFI, HYSEP, PART), flow-duration curves, n-day low-flow and high-flow frequency statistics, trend tests and recession analysis, with direct retrieval of USGS gauge data built in.
These are the statistics that water-supply assessments, low-flow permitting and baseflow studies actually report, computed by the agency's own reference implementations. For scripted equivalents, R and Python packages cover much of the same ground; the Toolbox remains the citable point-and-click standard.
Other hydrology & catchment analysis tools covering similar workflow stages.
The US Army Corps standard for rainfall-runoff modelling — event and continuous simulation, free to use.
FAO's classic tool for crop water requirements and irrigation scheduling from climate and crop data.
Browser-based rainfall frequency analysis — fit and rank 11 distributions with confidence intervals.
Reservoir system simulation from HEC — operating rules, flood control and multi-reservoir networks, free.
Statistical hydrology from HEC: Bulletin 17C flood frequency, volume-duration and general frequency analysis.
DHI's integrated hydrological model — coupled overland, unsaturated, groundwater and channel flow.