FloPy
The Python interface to MODFLOW — build, run and post-process groundwater models entirely in code.
The standard for vadose-zone modelling — variably saturated flow and transport by Richards' equation.
by PC-Progress
The HYDRUS programs (PC-Progress, built on decades of USDA Salinity Lab lineage) simulate water, heat and solute movement in variably saturated media by solving Richards' equation — the physics between the ground surface and the water table that saturated models simplify away. Applications run from irrigation and drainage design to landfill covers, managed aquifer recharge and pesticide leaching.
HYDRUS-1D is free and ubiquitous in teaching and research; the 2D/3D products are commercial with add-ons (including coupled PHREEQC geochemistry via HP1/HP2). For serious unsaturated-zone questions it is the default toolset worldwide.
Other groundwater & hydrogeology tools covering similar workflow stages.
The Python interface to MODFLOW — build, run and post-process groundwater models entirely in code.
The USGS groundwater model — the world standard for aquifer simulation, rebuilt as a modular multi-model framework.
DHI's finite-element groundwater platform — unstructured meshes, density-driven flow, heat and mine dewatering.
Veteran commercial MODFLOW GUI with deep PEST integration — a consultant favourite for calibration-heavy work.
USGS particle tracking for MODFLOW — pathlines, travel times and capture zones from flow solutions.
Multi-species solute transport for MODFLOW — advection, dispersion, sorption and reactions in aquifers.