AQUATOX
EPA's aquatic ecosystem model — fate and ecological effects of nutrients, toxics and stressors together.
USGS R package for long-term water-quality and streamflow trends — home of the WRTDS method.
by US Geological Survey
Install
install.packages("EGRET")EGRET (Exploration and Graphics for RivEr Trends) is the USGS package for analysing decades-long records of streamflow and river chemistry. Its centrepiece, WRTDS (Weighted Regressions on Time, Discharge and Season), separates real water-quality trends from flow variability — now the standard method for nutrient-trend reporting in US rivers, including the Chesapeake Bay programme.
It pairs naturally with dataRetrieval for pulling USGS records, produces publication-grade graphics, and its methods papers give reviewers a solid citation trail. For "is this river actually getting cleaner" questions, EGRET is the credible answer machine.
Other water quality & environmental tools covering similar workflow stages.
EPA's aquatic ecosystem model — fate and ecological effects of nutrients, toxics and stressors together.
EPA's watershed assessment suite — HSPF continuous watershed-quality modelling with GIS and data access built in.
The standard 2D reservoir and stratified-river water-quality model — temperature, DO and eutrophication.
Open-source 3D hydrodynamics and water quality — the EFDC lineage modernised, with a commercial GUI option.
The classic river water-quality model — DO, nutrients and algae along a 1D stream network.
EPA's Water Quality Analysis Simulation Program — eutrophication, toxics and sediment in rivers and estuaries.